Publications
Computational Complex Networks
- Agent-Based Model Forecasts Aging of the Population of People Who Inject Drugs in Metropolitan Chicago and Changing Prevalence of Hepatitis C Infections. Alexander Gutfraind, Basmattee Boodram, Nikhil Prachand, Atesmachew Hailegiorgis, Harel Dahari, Marian E. Major, PLOS ONE, 30 Sep 2015.
- Gutfraind A, Boodram B, Ouellet LJ, Prachand N, Perelson AS, Feinstone S, Novak RM, Mniszewski SM, Del Valle SY, Dahari H, Major M. Implementing a data-driven model of hepatitis C infections in metropolitan Chicago: a concept paper. Accepted at the Proceedings of the 8th INFORMS Workshop on Data Mining and Health Informatics 2013.
- Gutfraind A, Boodram B, Prachand N, Hailegiorgis A, Dahari H*, Major M*. Agent-based model forecasts aging of the population of people who inject drugs in metropolitan Chicago and changing prevalence of hepatitis C infections. (* equal contributors)
- Echevarria D, Gutfraind A, Boodram B, Major M, Del Valle S, Cotler SJ, Dahari H. Modeling treatment scale up effect on hepatitis C prevalence among persons who inject drugs in metropolitan Chicago.
- M. P. Johnson, A. Gutfraind, and K. Ahmadizadeh, “Evader interdiction: Algorithms, complexity and collateral damage,” Annals of Operations Research, 2013. to appear.
- A. Gutfraind in Handbook of Optimization in Complex Networks (M. T. Thai and P. M. Pardalos, eds.), ch. Optimizing Network Topology for Cascade Resilience, New York: Springer, 2011. Invited Chapter.
- A. Gutfraind, A. Hagberg, D. Izraelevitz, and F. Pan, “Interdiction of a Markovian Evader,” in Proceedings of the 12th INFORMS Computing Society Conference on OR, Computing, and Homeland Defense (R. K. Wood and R. F. Dell, eds.), pp. 3–15, INFORMS, Jan 2011.
- A. Gutfraind, A. Hagberg, and F. Pan, “Optimal interdiction of unreactive Markovian evaders,” in CPAIOR 2009 (J. Hooker and W.-J. van Hoeve, eds.), vol. 5547 of Lecture Notes in Computer Science, pp. 102–116, Springer, May 2009.
Social Risk Network
- Boodram B, Mackesy-Amiti M, Latkin C. The role of social networks and geography on risky injection behaviors of young persons who inject drugs. Drug and Alcohol Dependence. Submitted for publication (April 2015).
- Latkin CA, Davey-Rothwell MA, Knowlton AR, Boodram B, Williams CT. Social network approaches to recruitment, HIV prevention, medical care, and medication adherence. Journal of Acquired Immune Deficiency Syndromes. In press, December 2012.
- Boodram B, Williams, CT. Collecting whole network data for human immunodeficiency virus prevention: A review of current strategies. Journal of AIDS and HIV Research. March 15, 2013.
- Youm, Y., Mackesy-Amiti, M. E., Williams, C. T., & Ouellet, L. J. (2009). Identifying hidden sexual bridging communities in Chicago. Journal of Urban Health, 86 (Suppl 1), 107-120. doi: 10.1007/s11524-009-9371-6. PMCID: PMC2705490.
Drug Users Epidemiology
- Mackesy-Amiti M, Boodram B, Ouellet LJ, Bailey S. Evaluation of an intervention to promote parental involvement in harm reduction for young injection drug users. In press. 2013.
- Mackesy-Amiti M, Boodram B, Williams CT, Broz D. Sexual risk behavior associated with transition to injection among young non-injecting heroin users. AIDS and Behavior. DOI 10.1007/s10461-012-0335-6. October 12, 2012.
- Mackesy-Amiti, M.E., Finnegan, L., Ouellet, L., et al. (In Press). Peer-education intervention to reduce injection risk behaviors benefits high-risk young injection drug users: A latent transition analysis of the CIDUS 3/DUIT Study. AIDS and Behavior. doi: 10.1007/s10461-012-0373-0. PMCID: In Process.
- Mackesy-Amiti, M.E., Boodram, B., Williams, C., Ouellet, L.J., Broz, D. (2012). Sexual risk behavior associated with transition to injection among young non-injecting heroin users. AIDS and Behavior, Online, 12 Oct. doi: 10.1007/s10461-012-0335-6. PMCID: PMC3567214.
- Mackesy-Amiti, M.E., Donenberg, G., Ouellet, L.J. (2012). Prevalence of psychiatric disorders among young injection drug users. Drug and Alcohol Dependence, 124(1-2), 70-78. doi: 10.1016/j.drugalcdep.2011.12.012. PMCID: PMC3350828.
- Kapadia, F., Latka, M. H., Wu, Y., Strathdee, S. A., Mackesy-Amiti, M. E., Hudson, S. M., et al. (2011). Longitudinal determinants of consistent condom use by partner type among young injection drug users: The role of personal and partner characteristics. AIDS and Behavior, 15(7), 1309-1318. doi: 10.1007/s10461-009-9569-3. PMCID: PMC3180628.
- Mackesy-Amiti, M. E., Fendrich, M., and Johnson, T. P. (2010). Symptoms of substance dependence and risky sexual behavior in a probability sample of HIV negative men who have sex with men in Chicago. Drug and Alcohol Dependence, 110(1-2), 38-43. doi: 10.1016/j.drugalcdep.2010.01.016. PMCID: PMC2885520.
- Fendrich, M., Mackesy-Amiti, M.E., Johnson, T.P., and Pollack, L.M. (2010). Sexual risk behavior and drug use in two Chicago samples of men who have sex with men: 1997 vs. 2002. Journal of Urban Health, 87(3), 452-466. doi: 10.1007/s11524-009-9432-x. PMCID: PMC2871084.
- Mackesy-Amiti, M.E., McKirnan, D.J., and Ouellet, L.J. (2010). Relationship characteristics associated with anal sex among female drug users. Sexually Transmitted Diseases, 37(6), 346-351. doi: 10.1097/OLQ.0b013e3181c71d61. PMCID: PMC3278856.
- Williams, C. T., Mackesy-Amiti, M. E., McKirnan, D. J., and Ouellet, L. J. (2009). Differences in sexual identity, risk practices, and sex partners between bisexual men and other men among a low-income drug-using sample. Journal of Urban Health, 86(Suppl 1), 93–106. doi: 10.1007/s11524-009-9367-2. PMCID: PMC2705486.
- Mackesy-Amiti, M. E., Fendrich, M., and Johnson, T. P. (2009). Substance-related problems and treatment among men who have sex with men in comparison to other men in Chicago. Journal of Substance Abuse Treatment, 36(2): 227-233. doi: 10.1016/j.jsat.2008.06.004. PMCID: PMC2652041.
- Wagner, K. D., Hudson, S. M., Latka, M. H., Strathdee, S. A., Thiede, H., Mackesy-Amiti, M. E., and Garfein, R. S. (2009). The effect of intimate partner violence on receptive syringe sharing among young female injection drug users: An analysis of mediation effects. AIDS and Behavior, 13(2), 217-224. doi: 10.1007/s10461-007-9309-5.
- Mackesy-Amiti, M. E., Fendrich, M., and Johnson, T. P. (2008). Prevalence of recent illicit substance use and reporting bias among MSM and other urban males. Addictive Behaviors, 33(8), 1055-1060. doi:10.1016/j.addbeh.2008.03.003. PMCID: PMC2519797.
- Fendrich, M., Mackesy-Amiti, M.E., and Johnson, T.P. (2008). Validity of self-reported substance use in MSM: Comparisons with a general population sample. Annals of Epidemiology, 18(10): 752-759. doi: 10.1016/j.annepidem.2008.06.001. PMCID: PMC2586999.
- Bailey, S.L., Ouellet, L.J., Mackesy-Amiti, M.E., Golub, E.T., Hagan, H., Hudson, S.M., Latka, M.H., Gao, W., and Garfein, R.S. (2007). Perceived risk, peer influences, and injection partner type predict receptive syringe sharing among young injection drug users in five U.S. cities. Drug and Alcohol Dependence, 91(Supplement 1): S18-S29. doi: 10.1016/j.drugalcdep.2007.02.014.
- Fendrich, M., Mackesy-Amiti, M.E., Johnson, T., Hubbell, A., and Wislar, J.S. (2005). Tobacco reporting validity in an epidemiological drug use survey. Addictive Behaviors, 30: 175-181.
- Fendrich, M. and Mackesy-Amiti, M.E. (2000). Decreased drug reporting in a cross-sectional student drug use survey. Journal of Substance Abuse, 11(2):161-172.
- Mackesy-Amiti, M.E. and Fendrich, M. (2000). Trends in inhalant use among high school students in Illinois: 1993-1995. American Journal of Drug and Alcohol Abuse, 26(4): 569-590.
- Mackesy-Amiti, M.E. and Fendrich, M. (1999). Inhalant use and delinquent behavior among adolescents: A comparison of inhalant users and other drug users. Addiction, 94(4): 555-564.
- Fendrich, M., Mackesy-Amiti, M.E., Wislar, J.S. and Goldstein, P.J. (1997). Childhood abuse and the use of inhalants: Differences by degree of use. American Journal of Public Health, 87(5): 765-769. PMCID: PMC1381047.
- Fendrich, M., Mackesy-Amiti, M.E., Wislar, J.S. and Goldstein, P.J. (1997). The reliability and consistency of drug reporting in ethnographic samples. The Validity of Self-Reported Drug Use: Improving the Accuracy of Survey Estimates. NIDA Research Monograph, No. 167. Rockville, MD: National Institute on Drug Abuse.
- Mackesy-Amiti, M.E., Fendrich, M., and Goldstein, P.J. (1997). Sequence of drug use among hard drug users: Typical vs. atypical progression. Drug and Alcohol Dependence, 45: 185-196.
- Mackesy-Amiti, M.E., Fendrich, M., Libby, S., Hirsch, J. and Grossman, J. (1996). Assessment of knowledge gains in proactive training for postvention. Suicide and Life-Threatening Behavior, 26(2), 161-174.
- Christensen, C., Heckerling, P., Mackesy-Amiti, M.E., Bernstein, L., and Elstein, A. (1995). Pervasiveness of framing effects among physicians and medical students. Journal of Behavioral Decision-Making, 8(3), 169-180.
- Fendrich, M. and Mackesy-Amiti, M.E. (1995). Inconsistencies in lifetime cocaine and marijuana use reports: Impact on prevalence and incidence. Addiction, 90, 111-118.
- Fendrich, M., Mackesy-Amiti, M.E., Goldstein, P., Spunt, B., and Brownstein, H. (1995). Substance involvement among juvenile murderers: Comparisons with older offenders based on interviews with prison inmates. International Journal of the Addictions, 30, 1363-1382.
- Grossman, J., Hirsch, J., Libby, S., Goldenberg, D., Fendrich, M., Mackesy-Amiti, M.E., Hill-Chance, G., and Mazur, C. (1995). Strategies for school-based response to loss: Proactive training and postvention consultation. Crisis, 16, 18-26.
Hepatitis C: Epidemiology
- Agent-Based Model Forecasts Aging of the Population of People Who Inject Drugs in Metropolitan Chicago and Changing Prevalence of Hepatitis C Infections. Alexander Gutfraind, Basmattee Boodram, Nikhil Prachand, Atesmachew Hailegiorgis, Harel Dahari, Marian E. Major, PLOS ONE, 30 Sep 2015.
- Mathematical Modeling of Hepatitis C Prevalence Reduction with Antiviral Treatment Scale-Up in Persons Who Inject Drugs in Metropolitan Chicago. Desarae Echevarria, Alexander Gutfraind, Basmattee Boodram, Marian Major, Sara Del Valle, Scott J Cotler, Harel Dahari, PLOS ONE, 21 Aug 2015.
- Boodram B, Mackesy-Amiti M. Lessons learned from a hepatitis C testing, case management and linkage to care program for persons who inject drugs from metropolitan Chicago. Public Health Reports,Special Supplement. Submitted for publication (December 2014).
- Boodram B, Hershow RC, Cotler SJ, Ouellet LJ. Chronic hepatitis C virus infection and increases in viral load in a prospective cohort of young, HIV-negative injection drug users. Drug and Alcohol Dependence. 119(3):166-71, December 15, 2011.
- Boodram B, Golub ET, Ouellet LJ. Socio-behavioral and geographic correlates of prevalent hepatitis C virus infection among young injection drug users in metropolitan Baltimore and Chicago. Drug and Alcohol Dependence. 111(1-2):136-145, September 1, 2012.
- Wang JH, Zheng X, Ke X, Dorak MT, Shen J, Boodram B, O'Gorman M, Beaman K, Cotler SJ, Hershow RC, Rong L. Ethnic and geographical differences in HLA associations with the outcome of hepatitis C virus infection. Virology Journal. 6(1):46-53, May 1, 2009.
- Boodram B, Hershow RC, Klinzman D, Stapleton JT. GB virus C infection among young, HIV-negative injection drug users with and without hepatitis C virus infection. Journal of Viral Hepatitis. 118 (4): e153-e159, April 11, 2011.
Hepatitis C: Viral Kinetics Modeling
- Graw F, Martin DN, Perelson AS, Uprichard SL, Dahari H. Quantification of HCV cell-to cell spread using a stochastic modeling approach. J. Virology (2015); in press.
- Dahari H, Shteingart S, Gafanovich I, Cotler SJ, D’Amato M, Pohl RT, Weiss G, Ashkenazi YJ, Tichler T, Goldin E, Lurie Y. Sustained virological response with intravenous silibinin: individualized
- Guedj J, Rotman Y, Cotler S.J, Schmid P, Albrecht J, Haynes-Williams V, Liang T.J, Hoofnagle J.H, Heller T, Dahari H. Understanding early hepatitis D virus and hepatitis B surface antigen kinetics during pegylated interferon-alpha therapy via mathematical modeling. Hepatology (2014); 60(6):1902- 10 [I.F. 12.0]; NIHMSID #622381
- Guedj J*, Dahari H*, Rong L, Sansone N, Nettles RE, Cotler SJ, Layden JE, Uprichard SL, Perelson AS. Modeling shows that the NS5A inhibitor daclatasvir has two modes of action and yields a new estimate of the hepatitis C virus half-life. Proc Natl Acad Sci USA. (2013) Mar 5;110(10):3991-6 [Impact Factor, I. F. 9.7] (* equal contributors). Selected by Faculty of 1000.
- Zhang J, Lipton HL, Perelson AS, Dahari H. Modeling the acute and chronic phases of Theiler murine encephalomyelitis virus infection. J Virology (2013) April;87(7):4052-4059 [I. F. 5.1]
- L. Rong, H. Dahari, R.M. Ribeiro, A.S. Perelson. Rapid emergence of hepatitis C virus protease inhibitor resistance. Science Translational Medicine (AAAS) (2010) 2, 30ra32. [I.F., 14.4]
- Neumann AU, Lam NP, Dahari H, Gretch DR, Wiley TE, Layden TJ, Perelson AS. Hepatitis C viral dynamics in vivo and the antiviral efficacy of interferon-alpha therapy. Science (AAAS) (1998) 282:103-7. [I.F., 29.2]
- Canini L, DebRoy S, Mariño Z, Crespo G, Navasa M, D’Amato M, Ferenci P, Cotler SJ, Forns X, Perelson AS, Dahari H. Severity of liver disease affects HCV kinetics in patients treated with intravenous silibinin monotherapy. Antiviral Therapy (2014) in press [I.F. 4.1] NIHMSID # 639247
- Rong L, Guedj J, Dahari H, Perelson AS. Treatment of hepatitis C with an interferon-based lead-in phase: A perspective from mathematical modeling. Antiviral Therapy (2014) 19:469-477 [I.F. 4.1]
- Rotman Y, Noureddin M, Feld JJ, Guedj J, Witthaus M, Han H, Park Y, Park SH, Heller T, Ghany MG, Doo E, Koh C, Abdalla A, Gara N, Sarkar S, Thomas E, Ahlenstiel G, Edlich B, Titerence R, Hogdal L, Rehermann B, Dahari H, Perelson AS, Hoofnagle JH and Liang TJ. Effect of Ribavirin on Viral Kinetics and Liver Gene Expression in Chronic Hepatitis C. Gut (2014) Jan;63(1):161-9 [I.F. 10.1]
- Rong L*, Guedj J*, Dahari H*, Smith P, Perelson AS. Multiscale modeling approach predicts that the protease inhibitor danoprevir blocks several distinct stages of the HCV replication in vivo. PLoS Comp Bio (2013) Mar;9(3):e1002959 [I. F. 5.2] (* equal contributors)
- Guedj J*, Dahari H*, Pohl RT, Ferenci P, Perelson AS Understanding silibinin's modes of action against HCV using viral kinetic modeling. J Hepatology (2012) 56: 1019-1024 [I.F. 9.3] (* equal contributors)
- Guedj J, Dahari H, Shudo E, Smith P, Perelson AS. Hepatitis C viral kinetics with the nucleoside polymerase inhibitor mericitabine (RG7128). Hepatology (2012) 55(4):1030-7 [I.F. 12.0]
- Araújo ESA*, Dahari H*, Cotler SJ, Layden TJ, Neumann AU, Melo CE, Tatsch FF, Barone AA. Pharmacodynamics of PEG-IFN alpha-2a and HCV response as a function of IL28B polymorphism in HIV/HCV co-infected patients. J Acquir Immune Defic Syndr (2011); 56:95–99 [I.F. 4.6] (* equal contributors)
- Evaldo S.A. Araújo, Harel Dahari , Avidan U. Neumann , Norma de Paula Cavalheiro, Carlos Eduardo Melo,Evandro Sobroza de Melo, Thomas J. Layden, Scott J. Cotler, Antônio Alci Barone. Very early prediction of response to HCV treatment with peg-IFN-alfa-2a and ribavirin in HIV/HCV coinfected patients. J Viral Hepatitis (2011); Apr;18(4):e52-60 [I.F. 3.3]
- Harel Dahari, Stephen Feinstone, Marian Major. Quantitative evaluation of HCV vaccine success: a meta-analysis. Gastroenterology (2010); Sep 139:965-974 [I.F. 12.6]
- Harel Dahari, Evaldo S. Affonso de Araujo, Bart L. Haagmans, Thomas J. Layden, Scott J. Cotler, Antonio A. Barone, Avidan U. Neumann. Pharmacodynamics of PEG-IFN alpha-2a in HIV/HCV coinfected patients: Implications for treatment outcomes. J Hepatology (2010); 53: 460-467 [I.F. 9.3]. (see Editorial on pages 418-420)
- Ali Sabahi, Katherine A. Marsh, Harel Dahari, Peter Corcoran, Jennifer M. Lamora, Xuemei Yu, Robert F. Garry, Susan L. Uprichard. The rate of hepatitis C virus infection initiation in vitro is directly related to particle density. Virology (2010) Nov 10;407(1):110-9 [I.F. 3.0]
- Dahari H*, Sainz Jr*. B, Perelson AS, Uprichard SL. Modeling subgenomic HCV RNA kinetics during interferon- treatment. J Virology (2009) Jul;83(13):6383-90. [I. F. 5.1] (* equal contributors)
- Burg D, Libin R, Neumann AU, Dahari H. Mathematical modeling of viral kinetics under immune control during primary HIV-1 infection. Journal Theoretical Biology (2009) Aug 21;259(4):751-9. [I. F. 2.3]
- Dahari H, Shudo E, Cotler SJ, Layden TJ, Perelson AS. Modeling HCV kinetics: The relationship between the infected cell loss rate and the final slope of viral decay. Antiviral Therapy (2009) 14(3):459-64. [I.F. 4.1]
- Dahari H, Layden-Almer JE, Kallwitz E, Ribeiro RM, Cotler SJ, Layden TJ, Perelson AS. A mathematical model of hepatitis C virus dynamics in patients with high baseline viral loads or advanced liver disease. Gastroenterology (2009) Apr;136(4):1402-9. [I. F. 12.6]
- Dahari H, Ribeiro RM, Perelson AS. Triphasic decline of HCV RNA during antiviral therapy. Hepatology (2007) Jul;46(1):16-21. [I. F. 12.0] (Selected by Faculty of 1000 Biology: Factor 6.0 = Must Read)
- Dahari H, Lo A, Ribeiro RM, Perelson AS. Modeling HCV Dynamics: Liver regeneration and critical drug efficacy. Journal Theoretical Biology (2007) Jul 21;247(2):371-81. [I. F. 2.3]
- Dahari H, Markatou M, Zeremski M, Haller I, Ribeiro RM, Licholai T, Perelson AS, Talal AH. Early ribavirin pharmacokinetics, HCV RNA and alanine aminotransferase kinetics in HIV/HCV co-infected patients during treatment with pegylated Interferon and ribavirin. J Hepatology (2007) July 47(1):23- 30. [I. F. 9.3] (see Editorial July 47(1):1-3).
- Dahari H, Ribeiro RM, Rice CM, Perelson AS. Mathematical modeling of subgenomic hepatitis C viral replication in Huh-7 cells. J Virology (2007) Jan;81(2):750-60. [I. F. 5.1]
- Dahari H, Major M, Zhang X, Mihalik K, Rice CM, Perelson AS, Feinstone SM, Neumann AU. Mathematical Modeling of Primary Hepatitis C Infection: Non-cytolytic clearance and early blockage of virion production. Gastroenterology (2005); 128(4): 1056-1066. [I. F. 12.6]
- Dahari H, Feliu A, Garcia-Retortillo M, Forns X, Neumann AU. Second Hepatitis C Compartment Indicated by Viral Dynamics during Liver Transplantation. J Hepatology (2005) April 42(4): 491-498. [I. F. 9.3] (see Editorial April 42(4):441-443).
- Major ME, Dahari H, Mihalik K, Puig M, Rice CM, Neumann AU, Feinstone SM. Hepatitis C Virus Kinetics and Host Responses Associated with Disease and Outcome of Infection. Hepatology (2004) Jun;39(6):1709-20. [I. F. 12.0]
- Pawlotsky JM, Dahari H, Neumann AU, Hezode C, Germanidis G, Lonjon I, Castera L, Dhumeaux D. Antiviral Action of Ribavirin in Chronic Hepatitis C. Gastroenterology (2004) 126(3):703-14. [I. F. 12.6]
- Bouvier-Alias M, Patel K, Dahari H, Beaucourt S, Larderie P, Blatt L, Hezode C, Picchio G, Dhumeaux D, Neumann AU, McHutchison JG, Pawlotsky JM.. Clinical utility of total HCV core antigen quantification: a new indirect marker of HCV replication. Hepatology (2002) 36(1): 211-218. [I. F. 12.0]
- Neumann AU, Lam NP, Dahari H, Davidian M, Wiley TE, Mika BP, Perelson AS, Layden TJ. Differences in viral dynamics between genotypes 1 and 2 of hepatitis C virus. J Infectious Diseases. (2000) July 182(1):28-35. [I. F. 5.7]
- Guedj J, Dahari H, Uprichard SL, Perelson AS. The HCV NS5A inhibitor daclatasvir has dual mode of action and reveals a shorter HCV half-life estimate. Expert Rev Gastroentrol Hepatol. (2013) Jul;7(5):397-9.
- Polyak SJ, Oberlies NH, Pécheur E, Dahari H, Ferenci P, Pawlotsky JM. Silymarin for HCV infection. Antiviral Therapy (2013) 18:141-147 [I.F. 4.1]
- Dahari H, Guedj J, Perelson AS, Layden TJ. Hepatitis C viral kinetics in the era of direct acting antiviral agents and IL28B. Current Hepatitis Reports (2011) Volume 10, Number 3, 214-227.
- Guedj J, Rong R, Dahari H, Perelson AS. A perspective on modeling hepatitis C virus infection. J Viral Hepatitis (2010); 17, 825–833.
- Dahari H, Shudo E, Ribeiro RM, Perelson AS. Mathematical modeling of HCV infection and treatment. Hepatitis C Protocols. 2nd ed. NJ: Humana Press (2009): 439-453. Also published in Methods Mol Biol. 2009;510:439-53.
- Dahari H, Layden-Almer JE, Perelson AS, Layden TJ. Hepatitis C viral kinetics in special populations. Current Hepatitis Reports (2008) Volume 7, Issue 3: 97-105.
- Dahari H & Cotler SJ. Individualized treatment for patients with low HCV load (genotype 1): A viral kinetic approach. Hepatology (2014) Jun;59(6):2422-3 [I. F. 12.0] NIHMSID #531892
- Dahari H, Cotler SJ, Layden TJ, Perelson AS. Understanding triphasic HCV decline during treatment in the era of IL28B polymorphisms and direct acting antiviral agents via mathematical modeling. J Hepatology (2013) vol. 58:831–843 [I. F. 9.3]; PubMed #23246507; NIHMSID #466174
- Dahari H, Guedj J, Perelson AS. Silibinin’s mode of action against HCV: A controversy yet to be resolved. Hepatology (2011) Aug;54(2):749. [I. F. 12.0]; PMC3677944
- Guedj J, Dahari H, Perelson AS. Understanding the nature of early HCV RNA blips and the use of mathematical modeling of viral kinetics during IFN-based therapy. Proc Natl Acad Sci U S A. (2011) Jul 19;108(29):E302. [I. F. 9.7]
- Dahari H, Rong L, Layden TJ, Cotler SJ. Hepatocyte proliferation and hepatitis C virus (HCV) kinetics. Clinical Pharmacology & Therapeutics (2011) Mar;89(3):353-4. [I. F. 7.0]
- Dahari H & Perelson AS. Hepatitis C virus RNA kinetics: Drug efficacy and the rate of HCV-infected cells loss. World Journal Gastroenterology (2007):13(21):3020-21. [I. F. 3.2]
- Dahari H & Perelson AS. Hepatitis C virus kinetics in chimeric mice during antiviral therapy. Hepatology (2007) Oct 12;46(6):2048-2049. [I. F. 12.0]
- Dahari H, Forns X, Neumann AU, Perelson AS. The extrahepatic contribution to HCV plasma viremia. J Hepatology (2006) Oct 45(4):626-7. [I. F. 9.3]
- Katja Roos, Katharina Esser-Nobis, Paul Schnitzler, Swati DebRoy, Harel Dahari, Volker Lohmann, Christoph Eisenbach. Successful quadruple therapy with silibinin, telaprevir, ribavirin and pegIFNα2a in a liver transplanted hepatitis c virus-infected patient.
- Shin, E.C., Park, S.H., Nascimbeni, M., Major, M.E., Caggiari, L., de Re, V., Feinstone, S.M., Rice, C.R. and Rehermann, B. The frequency of CD127+ HCV-specific T cells but not the Expression of Exhaustion Markers Predict the Outcome of Acute Hepatitis C Virus Infection. (2013) Journal of Virology. 87:4772-4777.
- Duan, H., Kachko, A., Zhong, L., Struble, E., Pandey, S., Yan, H., Harman, C., Virata-Theimer, M.L., Deng, L., Zhao, Z., Major, M.E., Feinstone, S.M. and Zhang, P. Amino Acid Residues-Specific neutralization and Non-neutralization of Hepatitis C Virus by Monoclonal Antibodies to the E2 Protein. (2012) Journal of Virology. 86:12686-12694.
- Kachko, A., Kochneva, G., Sivolobova, G., Grazhdantseva, A., Lupan, T., Zubkova, I., Wells, F., Merchlinsky, M., Williams, O., Watanabe, H., Ivanova, A., Shvalov, A., Loktev, V., Netesov, S. and Major, M.E. New Neutralizing Antibody Epitopes in Hepatitis C Virus Envelope Glycoproteins are Revealed by Dissecting Peptide Recognition Profiles (2011) Vaccine 30:69-77.
- Shin, E.C., Park, S.H., Demino, M., Nascimbeni, M., Mihalik, K., Major, M.E., Veerapu, N.S., Heller, T., Feinstone, S.M., Rice, C.R. and Rehermann, B. Delayed Induction, Not Impaired Recruitment of Specific CD8(+) T Cells, Causes the Late Onset of Acute Hepatitis C (2011) Gastroenterology 141 (2):686-695.
- Dahari, H.; Feinstone, S.M. and Major, M.E. Meta-Analysis of Hepatitis C Virus Vaccine Efficacy in Chimpanzees Indicates an Importance for Structural Proteins (2010) Gastroenterology. 139 (3): 965-974.
- Duan, H., Struble, E., Zhong, L., Mihalik, K., Major, M.E., Zhang, P., Feinstone, S.M., and Feigelstock, D. Hepatitis C virus with a naturally occurring single amino-acid substitution in the E2 envelope protein escapes neutralization by naturally-induced and vaccine-induced antibodies. (2010) Vaccine. 28:4138-4144.
- Watanabe, H., Wells, F. and Major, M.E. Clearance of hepatitis C in chimpanzees is associated with intrahepatic T-cell perforin expression during the late acute phase (2010). Journal of Viral Hepatitis. 17:245-253.
- Zhang, P., Zhong, L., Struble, E., Watanabe, H., Kachko, A., Mihalik, K., Virata-Theimer, M.L., Alter, H., Feinstone, S.M., and Major, M.E. (2009). Depletion of Interfering Antibodies in Chronic Hepatitis C Patients and Vaccinated Chimpanzees Reveals Broad Cross-genotype Neutralizing Activity. Proc. Nat. Acad. Sci U.S.A. 106 (18) 7537-7541.
- Zubkova, I., Choi, Y.H., Chang, E., Pirollo, K., Uren, T., Watanabe, H., Wells, F., Krawczynski, K. and Major, M.E. T-cell Vaccines that Elicit Effective Immune Responses Against HCV in Chimpanzees Create Greater Immune Pressure for Viral Mutation (2009) Vaccine. 27:2594-2602.
- Jeonghoon Heo, Valentina M. Factor, Tania Uren, Yasushi Takahama, Ju-Seog Lee, Marian Major, Stephen M. Feinstone, and Snorri S. Thorgeirsson (2006). Hepatic Precursors Derived From Murine Embryonic Stem Cells Contribute to Regeneration of Injured Liver. Hepatology 44:1478-1486.
- Puig, M., Mihalik, K., Tilton, J.C., Williams, O, Merchlinsky, M., Connors, M., Feinstone, S.M., and Major, M.E. (2006). CD4+ immune escape and subsequent T-cell failure following chimpanzee immunization against hepatitis C virus. Hepatology. 44(3):736-745
- Lindenbach, BD, Meuleman, P, Ploss, A, Vanwolleghem, T, Syder, AJ, McKeating, JA, Lanford, R, Feinstone, SM, Major, ME, Leroux-Roels, G, M. Rice, CM. (2006) Cell culture-grown hepatitis C virus is infectious in vivo and can be re-cultured in vitro. Proc. Nat. Acad. Sci U.S.A. 103 (10) 3805-9.
- Dahari, H., Major, M.E., Zhang, X., Mihalik, K., Rice, C.R., Perelson, A.S., Feinstone, S.M., and Neumann, A.V. (2005) Non-cytolytic HCV clearance and early blockade of viral production indicated by mathematical modeling of primary HCV infection in chimpanzees. Gastroenterology. 128 (4) 1056-1066.
- Prikhod’ko, E.A. Prikhod’ko, G.G., Siegel, R.M., Thompson, P., Major, M.E. and Cohen, J.I (2004) The NS3 Protein of Hepatitis C Virus Induces Caspase-8 Mediated Apoptosis Independent of its Protease or Helicase Activities. Virology. 329 (1) 53-67.
- Logvinoff, C., Major, M.E., Oldach, D., Heyward, S., Talal, A., P.Balfe., Feinstone, S., Alter, H., Rice, C.M., and McKeating, J.A. (2004) Neutralizing antibody response during acute and chronic hepatitis C virus infection. Proc. Nat. Acad. Sci U.S.A. 101 (27) 10149-10154.
- Fernandez, J., Taylor, D., Morhardt, D., Mihalik, K., Puig, M., Rice, C.M., Feinstone, S.M., and Major, M.E. (2004) Long Term Persistence of Infection in Chimpanzees Inoculated with an HCV Infectious Clone is Associated with a Decrease in Viral Mutation Rate and Low Levels of Heterogeneity. Journal of Virology. 78 (18) 9782-9789.
- Major, M.E., Dahari, H., Mihalik, K., Puig, M. Rice, C.M., Neumann, A.U., and Feinstone, S.M. (2004) Hepatitis C Virus Kinetics and Host Responses Associated with Disease and Outcome Of Infection. Hepatology. 39 (6) 1709-1720.
- Puig, M., Major, M.E., Mihalik, K., and Feinstone, S.M. (2004). Vaccination of Naïve and HCV-recovered Chimpanzees with Recombinant HCV E1E2 Proteins. Vaccine. 22 (8) 991-1000.
- Lou, H., LaVoy, J., Choi, Y.H., Major, M.E., and Hagedorn, C.H. (2003). Analysis of mutant NS5B proteins encoded by isolates from chimpanzees chronically infected following clonal HCV RNA inoculation. Virology. 317 (1) 65-72.
- Nussbaum, J.M., Major, M.E., and Gunnery, S. (2003). Transcriptional upregulation of interferon-induced protein kinase, PKR, in breast cancer cells. Cancer Letters. 196 (2) 207-16.
- Nascimbeni, M.; Mizukoshi, E., Bosmann, M., Major, M.E., Mihalik, K.; Rice, C.M.; Feinstone, S.M., Rehermann, B. (2003). Protective Immunity against hepatitis C virus exerted by CD4+ and CD8+ memory T cells. Journal of Virology. 77 (8) 4781-4793.
- Thomson, M., Nascimbeni, M., Havert, M.B., Major, M.E., Gonzales, S., Alter, H., Feinstone, S.M., Murthy, K.K., Rehermann, B. and Liang, T.J (2003). The Clearance of Hepatitis C Virus Infection in Chimpanzees May Not Necessarily Correlate with the Appearance of Acquired Immunity. Journal of Virology. 77 (2) 862-870.
- Puig, M., Mihalik, K., Yu, M-Y., Feinstone, S.M., and Major, M.E. (2002). Sensitivity and Reproducibility of HCV quantification in chimpanzee sera using TaqMan Real Time PCR assay. J. of Virological Methods. 105: 253-263.
- Feinstone, S.M., Major, M.E., Mihalik, K.; and Yu, M-Y. (2002) Hepatitis C vaccines: problems and prospects. Proceedings of the 10th International Symposium on Viral Hepatitis and Liver Disease. Editors: Harold S. Margolis, Miriam J. Alter, T. Jake Liang and Jules L. Dienstag. International Medical Press.
- Major, M.E., Mihalik, K.; Puig, M.; Rehermann, B.; Nascimbeni, M.; Rice, C.M.; Feinstone, S.M. (2002). Previously infected and recovered chimpanzees exhibit rapid responses that control HCV replication upon rechallenge. Journal of Virology. 76 (13) 6586-6595.
- Major, M.E., Mihalik, K., Fernandez, J., Seidman, J., Kleiner, D., Kolykhalov, A.A., Rice, C.M. and Feinstone, S.M. Long term follow-up of chimpanzees inoculated with the first HCV infectious clone. (1999). Journal of Virology. 73 (4) 3317-3325.
- Shirai, M., Arichi, T., Chen, M., Nishioka, M., Ikeda, K., Takahashi, H., Enomoto, N., Saito, T., Major, M.E., Nakazawa, T., Akatsuka, T., Feinstone, S.M., Berzofsky, J.A. T cell recognition of hypervariable region 1 from hepatitis C virus envelope protein with multiple class II MHC molecules in mice and humans: Preferential help for induction of antibodies to the hypervariable region. (1999) Journal of Immunology. 162 568-576.
- Inchauspé, G., Major, M.E., Nakano, I., Vitvitski, L., Maisonnas, M.and Trepo, C. Immune responses against hepatitis C virus structural proteins following genetic immunization. (1998). Dev. Biol. Stand. 92:163-8.
- Nakano, I., Maertens, G., Major, M.E., Vitvitski, L., Dubuisson, J., Fournillier, A., De Martynoff, G., Trépo, C. and Inchauspé, G. Immunization with plasmid DNA encoding hepatitis C virus envelope E2 antigenic domains induces antibodies whose immune reactivity is linked to injection mode. (1997). Journal of Virology. 71 (9):7101-7109.
- Inchauspé, G., Major, M.E., Nakano, I., Vitvitski, L. and Trépo, C. DNA vaccination for the induction of immune responses against hepatitis C virus proteins. (1997). Vaccine 15 (8):853-856.
- Inchauspé, G., Vitvitski, L., Major, M.E., Jung, G., Spengler, U., Maisonnas, M. and Trépo, C. (1997). Plasmid DNA expressing a secreted or a non-secreted form of Hepatitis C virus nucleocapsid: Comparative studies of antibody and T-helper responses following genetic immunization. DNA and Cell Biology. 16 (2):185-195.
- Vidalin, O., Major, M.E., Rayner, B., Imbach, J-L., Trépo, C. and Inchauspé, G. (1996). In-vitro inhibition of Hepatitis C virus gene expression using chemically modified antisense oligodeoxynucleotides. Antimicrobial Agents and Chemotherapy. 40 (10):2337-2344.
- Lerat, H., Berby, F., Trabaud, M-A., Vidalin, O., Major, M.E., Trépo, C. and Inchauspé, G. (1996). Specific detection of Hepatitis C Virus minus strand RNA in hematopoietic cells. Journal of Clinical Investigation 97 (3):845-851.
- Major, M.E., Vitvitski, L., Mink, M., Schleef, M., Whalen, R.G., Trépo, C., Inchauspé, G. (1995). DNA immunization using chimeric vectors for the induction of immune responses against the Hepatitis C virus (HCV) nucleocapsid. Journal of Virology. 69:5798-5805.
- Major, M.E., S.Daenke., S.Nightingale and U.Desselberger. (1995). Differential Tax expression in HTLV-1 infected asymptomatic carriers. AIDS Research and Human Retroviruses. 11:415-421.
- Major, M.E., S.Nightingale and U.Desselberger (1993). Complete sequence conservation of the HTLV-1 tax gene in a family cluster showing different pathologies. Journal of General Virology. 74:2531-2537.
- Major, M.E., Eglin, R.P. and Easton, A.J. (1992) 3’ Terminal nucleotide sequence of human astrovirus type 1 and routine detection of astrovirus nucleic acid and antigens. Journal of Virological Methods. 39:217-225.
Other Hepatitis
- Guedj J*, Dahari H*, Pohl RT, Ferenci P, Perelson AS Understanding silibinin's modes of action against HCV using viral kinetic modeling. J Hepatology (2012) 56: 1019-1024 [I.F. 9.3] (* equal contributors)
- Marianna Halasi, Huiping Zhao, Harel Dahari, Uppoor G. Bhat, Erick B. Gonzalez, Aleksander V. Lyubimov, Debra A. Tonetti, Andrei L. Gartel. Thiazole antibiotics against breast cancer. Cell Cycle 2010; Mar; 9(6):1214-1217. [I.F. 4.2].
- Neumann AU, Phillips S, Levine I, Ijaz S, Dahari H, Eren R, Dagan S, Naoumov NV. Novel mechanism of antibodies to hepatitis B virus in blocking viral particle release from cells. Hepatology (2010); Sep;52(3):875-85 [I. F. 12.0]
- Dahari H, Shudo E, Ribeiro RM, Perelson AS. Modeling complex decay profiles of hepatitis B virus during antiviral therapy. Hepatology (2009) Jan;49(1):32-38. [I. F. 12.0]
- Guedj J, Canini L, Cotler SJ, Dahari H. Reply: Effect of interferon-alfa therapy on hepatitis D virus. Hepatology (2014) in press [I. F. 12.0]
- Dahari H, Cotler SJ, Layden TJ, Perelson AS. Hepatitis B virus clearance rate estimates. Hepatology (2009) Apr 2;49(5):1779-1780. [I. F. 12.0]
Public Health
- Boodram B, Torian L, Thomas P, Wilt S, Pollock DA, Bell M, Budnitz D. Rapid assessment of injuries among survivors of the terrorist attack on the World Trade Center–New York City, Sept 2001. Morbidity and Mortality Weekly Report. 51(1):1-5. Reprinted in the Journal of the American Medical Association. 287(7):835-838, January 11, 2002.
HIV
- Boodram B, Plankey MW, Cox C, Tien PC, Cohen MH, Anastos K, Karim R, Hyman C, Hershow RC. Prevalence and correlates of elevated body mass index among HIV-positive and HIV-negative women in the Women's Interagency HIV Study. AIDS Patient Care and STDs. 23(12):1009-1016, December 23, 2009.
- Donenberg, G., Emerson, E., Mackesy-Amiti, M., & Udell, W. (under review). HIV-Risk Reduction with Juvenile Offenders on Probation.
- Udell, W., & Donenberg, G. (under review). Back to basics: A call for promoting HIV knowledge among African American youth.
- Kagee, A., Donenberg, G., Davids, A., Vermaak, R., Simbayi, L., Ward, C., Naidoo, P., & Mtehmbu, J. (under review). Identifying risk factors for HIV infection among South African adolescents in mental health services: A qualitative study of parental perceptions.
- Swensen, R., Houck, C., Sarfati, D., Emerson, E., Donenberg, G., & Brown, L. K. (under review). Predictors of HIV testing among at-risk adolescents: Source of HIV information and coping strategy.
- Brown, L.K., Hadley, W., Donenberg, G., DiClemente, R., Lescano, C.M., Lang, D., Crosby, R., Barker, D.H., Oster, D., and Project STYLE Study Group (under review). Project STYLE: A multisite HIV prevention trial for youth in mental health treatment.
- Donenberg, G., Emerson, E., Mackesy-Amiti, M., Udell, W., & Floyd, B. (under review). Gender Differences in HIV-Risk Among Probation Youth.
- Wilson, H., Berent, E., Donenberg, G., Emerson, E., & Sandasera, A. (under review). HIV/STI Risk Among Juvenile Offenders on Probation: The Impact of Mental Health, Substance Use, and Trauma.
- Fendrich, M., Avci, O., Johnson, T.P., Mackesy-Amiti, M.E. (2013). Depression, substance use, and HIV risk in a probability sample of men who have sex with men. Addictive Behaviors, 38(3), 1715-1718. doi: 10.1016/j.addbeh.2012.09.005. PMCID: In Process
- Donenberg, G., Emerson, E., Mackesy-Amiti, M.E., Houck, C., Brown, L.K. (2012). Sexual experience among emotionally and behaviorally disordered students in therapeutic day schools: An ecological examination of adolescent risk. Journal of Pediatric Psychology, 37(8), 904-913. doi: 10.1093/jpepsy/jss056. PMCID:PMC3437680.
- Johnson, T.P., Fendrich, M., Mackesy-Amiti, M.E. (2012). An evaluation of the validity of the Crowne–Marlowe need for approval scale. Quality and Quantity, 46(6), 1883-1896. doi 10.1007/s11135-011-9563-5.
- Donenberg, G., Emerson, E., & Mackesy-Amiti, M. E. (2011). Sexual risk among African-American girls: Psychopathology and mother-daughter relationships. Journal of Consulting and Clinical Psychology, 79(2), 153-158. doi: 10.1037/a0022837. PMCID:PMC3077919.
- Mackesy-Amiti, M.E., Ouellet, L.J., Golub, E.T., Hudson, S., Hagan, H., Garfein, R.S. (2011). Predictors and correlates of reduced frequency or cessation of injection drug use during a randomized HIV prevention intervention trial. Addiction, 106(3), 601-608. doi: 10.1111/j.1360-0443.2010.03251.x.
- Fendrich, M., Smith, E. V., Pollack, L., and Mackesy-Amiti, M. E. (2009). Measuring sexual risk for HIV: A Rasch scaling approach. Archives of Sexual Behavior, 38(6): 922-935. doi: 10.1007/s10508-008-9385-2.
Special Population Topics
- Christensen, C., Cottrell, J.J., Murakami, J., Mackesy, M.E., Fetzer, B., and Elstein, A.S. (1993). Forecasting survival in the medical intensive care unit: A comparison of clinical prognoses with formal estimates. Methods of Information in Medicine, 32, 302-308
- Christensen, C., Heckerling, P., Mackesy, M.E., Bernstein, L.M., and Elstein, A.S. (1991). Framing bias among expert and novice physicians. Academic Medicine, 66(9, Suppl.), 76-78.
- Deutsch, F.M., and Mackesy, M.E. (1986). Friendship and the development of self-schemas. Personality and Social Psychology Bulletin, 11, 399-408. (Reprinted in Peplau, L. A., Sears, D., Taylor, S., & Freedman, J. (Eds.) Readings in social psychology: Classic and contemporary contributions, 2nd ed. (pp. 48-54). Englewood Cliffs, N.J.: Prentice Hall.)
- Fendrich, M., Wislar, J., Mackesy-Amiti, M.E., and Goldstein, P. (1996). Mechanisms of non-completion in ethnographic research on drugs: Results from a secondary analysis. Journal of Drug Issues, 26(1), 23-45.
- Fendrich, M., Mackesy-Amiti, M.E., and Kruesi, M. (2001). A mass distributed CD-ROM for school-based suicide prevention. Crisis, 21(3): 135-140.
- Johnson, T. P., Fendrich, M., & Mackesy-Amiti, M. E. (2010). Computer literacy and the accuracy of substance use reporting in an ACASI survey. Social Science Computer Review, 28(4), 515-523. doi: 10.1177/0894439309350693.
- Rodriguez, E., Donenberg, G., Emerson, E., Brown, L., & Houck, C. (under review). Family Environment and Coping in Youth Attending Therapeutic Day Schools
- Haider, S., Geller, S., & Donenberg, G. (invited). Reproductive health disparities - A focus on family planning and prevention amongst adolescent and minority women. Global Advances in Health and Medicine.
- Wilson, H. W., Pettineo, L., Edmonds, A., Goodman, E. A., Emerson, E., & Donenberg, G. (under review). Does Psychopathology Mediate the Pathway from Childhood Violence Exposure to Sexual Risk in Low-Income, Urban African American Girls?
- Joppa, M., Rizzo, C., Brown, L.K., Hadley, W., Dattadeen, J., Donenberg, G., DiClemente, R., and Project STYLE Study Group. (under review). Internalizing Symptoms and Sexual Risk among Adolescents in Mental Health Treatment: Personal Factors as Potential Mediators.
- Hadley, W., Barker, D. H., Lescano, C. M., Stewardt, A. J., Affleck, K., Donenberg, G., DiClemente, R., Brown, L. K., & Project STYLE Study Group. (under review). Associations between psychiatric impairment and sexual risk behavior among teens in mental health treatment.
- Houck, C., Swenson, R., Donenberg, G., Papino, A., Emerson, E., Brown, L. (under review). Adolescents’ emotions prior to sexual activity and associations with sexual risk factors.
- Brown, L. K., Houck, C., Donenberg, G., Emerson, E., Donahue, K., & Misbin, J. (under review). Affect Management for HIV Prevention for Adolescents in Therapeutic Schools: The immediate impact of Project Balance.
- Woods, B. A., Jaeger, J. A., Donenberg, G., & Wilson, H. (under review). The relationship between substance use characteristics and sexual health outcomes among African American female adolescents.
- Javdani, S., Rodriguez, E., Nichols, S., Emerson, E., & Donenberg, G. (under review). The Interplay between Romantic (but not Peer) Relationships and Early Pubertal Development Confers Risk for Externalizing Symptoms in African-American Girls Receiving Psychiatric Care.
- Rodriguez, E., Donenberg, G., & Emerson, E. (under review). Teen Interpersonal Behavior, Parenting and Depressive Symptoms In Adolescents Seeking Psychiatric Care.
- Rodriguez, E., Nichols, S., Javdani, S., Emerson, E., & Donenberg, G. (under review). Economic Hardship, Parenting, and Adolescent Psychopathology in Families of Clinically Disturbed Adolescents.
- Nichols, S., Javdani, S., Rodriguez, E., Emerson, E., & Donenberg, G. (under review). The Roles of Parental Monitoring and Sibling Teenage Pregnancy on Sexual Risk Behavior in African American Girls.
- Lincoln, T., Simon-Levine, D., Smith, J., Donenberg, G., Moore, K., Altice, F. L., Zaller, N., Jordan, A., & Draine, J. (under review). Prevalence and Predictors of Mental Health Distress Among a Cohort of HIV+ Jail Inmates.
- Seth, P., Lang, D., DiClemente, R., Braxton, N., Crosby, R., Brown, L.K., Hadley, W., & Donenberg, G. (under review). Sociodemographics and Parental Factors as Correlates of Psychotropic Medication Treatment among Adolescents in Mental Health Treatment.
- Wilson, H.W., Emerson, E., Donenberg, G.R., Pettineo, L. (in press). History of Sexual Abuse and Development of Sexual Risk Behavior from Early to Late Adolescence in Low-Income, Urban African American Girls. Women & Health.
- Hadley, W., Barker, D., Lescano, C.M., Brown, L.K., Stewart, A., Affleck, K., Donenberg, G., DiClemente, R., & Project STYLE Study Group (in press). Prevalence of sexual risk behavior among teens in mental health treatment and the influence of psychiatric impairment. Journal of HIV/AIDS & Social Services.
- Hadley, W., Stewart, A., Hunter, H., Affleck, K., Donenberg, G., DiClemente, R., & Brown, L. K. (2013). Reliability and Validity of the Dyadic Observed Communication Scale (DOCS). Journal of Child and Family Studies. 22, 279-287.
- Lang, D. L., Rieckmann, T., DiClemente, R. J., Crosby, R. A., Brown, L. K., & Donenberg, G. R. (2012). Multi-level Factors Associated with Pregnancy Among Adolescents Seeking Psychological Services. Journal of Urban Health. DOI:10.1007/s11524-012-9768-5
- Brown, L.K., Houck, C., Lescano, C., Donenberg, G., Tolou-Shams, M., Mello, J., & Emerson, E. (2012). Affect regulation and HIV risk among youth in therapeutic schools. AIDS and Behavior. DOI:10.1007/s10461-012-0220-3.
- Starr, L., Donenberg, G., & Emerson, E. (2012). Bidirectional Linkages Between Psychological Symptoms and Sexual Activities Among African American Adolescent Girls in Psychiatric Care. Journal of Clinical Child and Adolescent Psychology, 41, 811-821.
- Stewart, A. J., Theodore-Oklota, C., Hadley, W., Brown, L. K., Donenberg, G., & DiClemente, R. (2012). Mania Symptoms and HIV-Risk Behavior Among Adolescents in Mental Health Treatment. Journal of Clinical Child and Adolescent Psychology. Journal of Clinical Child & Adolescent Psychology. DOI:10.1080/15374416.2012.675569
- Donenberg, G., Emerson, E., Brown, L., Houck, C., & Mackesy-Amiti, M.E. (2012). HIV-Risk Among Youth in Therapeutic Schools: The Role of Families, Peers and Partners. Journal of Pediatric Psychology. DOI: 10.1093/jpepsy/JSS056
- Brakefield, T., Wilson, H., & Donenberg, G. (2012). Maternal Models of Risk: Links between Substance Use and Risky Sexual Behavior in African American Mothers and Daughters. Journal of Adolescence, 35, 959-68.
- Mackesy-Amiti, M., Donenberg, G.R., & Ouellet, L.J. (2012). Prevalence of Psychiatric Disorders Among Young Injection Drug Users. Drug and Alcohol Dependence, 124, 70– 78.
- Wilson, H., Woods, B., Emerson, E., & Donenberg, G. (2012). Patterns of Violence Exposure and Sexual Risk in Low-Income, Urban African American Girls. Psychology of Violence, 2, 194-207.
- Emerson, E., Donenberg, G., & Wilson, H. (2012). Health Protective Effects of Attachment Among African American Girls in Psychiatric Care. Journal of Family Psychology, 26, 124-132.
- Kapungu, C., Nappi, C.R., Thakral, C., Miller, S.A., Devlin, C., McBride, C., Hasselquist, E., Coleman, G., Drozd, D., Barve, C., Donenberg, G., DiClemente, R., Brown, L., & Project STYLE Study Group (2012). Recruiting and Retaining High-Risk Adolescents into Family-Based HIV Prevention Intervention Research. Journal of Child and Family Studies, 21, 578-588. G. R.
- Seth, P., Lang, D., DiClemente, R., Braxton, N., Crosby, R., Brown, L.K., Hadley, W., & Donenberg, G. (2012). Gender Differences in Sexual Risk Behaviors and Sexually Transmitted Infections among Adolescents in Mental Health Treatment. Sexual Health, 9, 240-246.
- Rizzo, C.J., Hunter, H., Lang, D., Oliveira, C., Donenberg, G., DiClemente, R., Brown, L.K., and the Project STYLE Study Group. (2011). Dating Violence Victimization and Unprotected Sex Acts among Adolescents in Mental Health Treatment. Journal of Child and Family Studies. DOI 10.1007/s10826-011-9543-3.
- Lang, D., Sales, J.M., Salazar, L.F., DiClemente, R.J., Crosby, R.A., Brown, L.K., & Donenberg, G.R. (2011). Determinants of Dual-Protection and Non-Dual-Protection Use in a Sample of Adolescent Women Diagnosed with Psychological Disorders. Infectious Diseases in Obstetrics and Gynecology. DOI:10.1155/2011/510239.
- Udell, W., Donenberg, G., & Emerson, E. (2011). Parents Matter in Probation Youth’s HIV-Risk. Journal of Family Psychology. 25, 785-789.
- Hadley, W., Hunter, H., Touloushams, M., Lescano, C., Brown, L., Thompson, A., Donenberg, G., & DiClemente, R. (2011). Monitoring challenges: A closer look at parental monitoring, maternal psychopathology, and adolescent sexual risk. Journal of Family Psychology, 25, 319-323.
- Udell, W., Donenberg, G., & Emerson, E. (2011). The impact of mental health problems and religiosity on African American girls HIV-risk. Cultural Diversity and Ethnic Minority Psychology,17, 217-224.
- Donenberg, G., Emerson, E., & Mackesy-Amiti, M. (2011). Sexual Risk Among African American Girls: Psychopathology and Mother-Daughter Relationships. Journal of Consulting and Clinical Psychology, 79, 153-158.
- Lang DL, Salazar LF, Crosby RA, Diclemente RJ, Brown LK, Donenberg GR. (2010). Neighborhood Environment, Sexual Risk Behaviors and Acquisition of Sexually Transmitted Infections Among Adolescents Diagnosed with Psychological Disorders. American Journal of Community Psychology, 46, 303-11.
- Brown, L.K., Hadley, W., Stewart, A., Lescano, C., Whitely, L., Donenberg, G., DiClemente, R., and Project STYLE Study Group. (2010). Psychiatric Disorders and Sexual Risk Among Adolescents in Mental Health Treatment. Journal of Consulting and Clinical Psychology, 78, 590-7.
- Nappi, C.M., Thakral, C., Kapungu, C., Donenberg, G.R., DiClemente, R., Brown, L., and Project STYLE Study Group. (2009). Parental Monitoring as a Moderator of the Effect of Family Sexual Communication on Sexual Risk Behavior among Adolescents in Psychiatric Care. AIDS and Behavior, 13, 1012-1020.
- Hadley, W., Brown, L. K., Lescano, C. M., Kell, H., Spalding, K., DiClemente, R., Donenberg, G.R., and Project STYLE study group (2009). Parent-adolescent Sexual Communication: Discussing Condoms Matters. AIDS and Behavior, 13, 997-1004.
- Garofalo, R., Mustanski, B., & Donenberg, G. (2008). Parents Know and Parents Matter; is it time to develop family-based HIV prevention programs for young men who have sex with men? Journal of Adolescent Health, 43, 201-4
- Nappi, C. M., McBride, C. K., & Donenberg, G. R. (2007). HIV/AIDS Communication among Adolescents in Psychiatric Care and their Parents. Journal of Family Psychology, 21,637-44.
- Mustanski, B., Garofalo, R., Herrick, A., & Donenberg, G. (2007). Multiple psychosocial health disparities additively increase risk for HIV among urban young men who have sex with men. Annals of Behavioral Medicine, 34, 37-45.
- Garofalo, R., Herrick, A., Mustanski, B., & Donenberg, G. (2007). The Tip of the Iceberg”: A Pilot Study of Internet Sex in Young Men Having Sex with Men. American Journal of Public Health. 97, 1113–1117.
- Garofalo, R., Mustanski, B., McKirnan, D. J., Herrick, A., & Donenberg, G. R. (2007). Methamphetamine and young men who have sex with men: Understanding patterns and correlates of use and the association with HIV-related sexual risk. Archives of Pediatrics & Adolescent Medicine, 161, 591-596.
- Garofalo, R., Herrick, A., Mustanski, B., & Donenberg, G. (2006). Online and at-risk Young men who have sex with men and the internet. Journal of Adolescent Health, 38, 104.
- Jordan, K., & Donenberg, G. R., (2006). Child and Adolescent Psychiatry and HIV/AIDS. Current Opinions in Pediatrics, 18, 545-550.
- Malow, R., Rosenberg, R., Donenberg, G., & Dévieux, J. (2006). Interventions and Patterns of Risk in Adolescent HIV/AIDS Prevention. American Journal of Infectious Diseases, 2, 80-89.
- Brady, S., & Donenberg, G. (2006). Violence exposure predicts adolescent engagement in substance use and sexual risk taking. Journal of the American Academy of Child and Adolescent Psychiatry, 45, 673-80.
- Mustanski, B., Donenberg, G., & Emerson, E. (2006). I can use a condom, I just don’t: The importance of motivation to prevent HIV in adolescent seeking psychiatric care. AIDS and Behavior, 10, 753-762.
- Donenberg, G., Emerson, E., Bryant, F., & King, S. (2006). Does substance use moderate the effects of parents and peers on risky sex? AIDS Care, 18, 194-200.
- Donenberg, G., Paikoff, R., & Pequegnat, W. (2006). Introduction to the special issue on Families and HIV: First Generation Prevention Programs. Journal of Pediatric Psychology, 41. 869-873.
- Donenberg, G., & Pao, M. (2005). Youths and HIV/AIDS: Psychiatry’s Role in a Changing Epidemic. Journal of the American Academy of Child and Adolescent Psychiatry, 44, 1-20.
- Donenberg, G., Schwartz, R., Emerson, E., Wilson, H., Bryant, F., & Coleman, G. (2005). Applying a Cognitive-Behavioral Model of HIV-Risk to Youths in Psychiatric Care. AIDS Education and Prevention, 17, 200-216.
- Donenberg, G. & Poa, M. (2004). HIV/AIDS Prevention and Intervention: Youths and Psychiatric Illness. Contemporary Psychiatry, 2, 1 – 8.
- Wilson, H., & Donenberg, G. R. (2004). Quality of parent communication about sex and its relationship to risky sexual behavior among adolescents in psychiatric care. Journal of Child Psychology and Psychiatry, 45, 387-395.
- LeBovidge, J.S., Lavigne, J., Donenberg, G. R., & Miller, M. (2003). Psychological Adjustment of Children and Adolescents with Chronic Arthritis: A Meta-analytic Review. Journal of Pediatric Psychology. 28, 29-39.
- Donenberg, G., Bryant, F., Wilson, H., & Emerson, E. (2003). Tracing the roots of Early Sexual Debut Among Adolescents in Psychiatric Care. Journal of the American Academy of Child and Adolescent Psychiatry, 42, 594-608.
- Donenberg, G. & Poa, M. (2003). Understanding HIV/AIDS: Psychosocial and Psychiatric Issues in Youths. Contemporary Psychiatry, 2, 1 – 8.
- Donenberg, G., Wilson, H., Emerson, E., & Bryant, F. (2002). Holding the line with a watchful eye: The impact of perceived parental monitoring and parental permissiveness on risky sexual behavior among adolescents in outpatient psychiatric service. AIDS Education and Prevention, 14, 138-157.
- Weersing, V. R., Weisz, J. R., & Donenberg, G. R. (2002). Development of the Therapy Procedures Checklist: A Therapist-Report Measure of Technique Use in Child and Adolescent Treatment. Journal of Clinical Child and Adolescent Psychology, 31, 168 – 180.
- Donenberg, G., Emerson, E., Bryant, F., Wilson, H., & Weber-Shifrin, E. (2001). Understanding AIDS-risk behavior among adolescents in psychiatric care: Links to psychopathology and peer relationships. Journal of the American Academy of Child and Adolescent Psychiatry, 40, 642-653.
- Finkelstein, J., Donenberg, G., Martinovich, Z. (2001). Maternal control and adolescent depression: Ethnic differences among clinically-referred girls. Journal of Youth and Adolescence, 30, 155-171.
- Donenberg, G. (1999). Reconsidering “Between-group psychotherapy outcome research and basic science:” Applications to child and adolescent psychotherapy outcome research. Journal of Clinical Psychology, 55, 181-190.
- Donenberg, G., Lyons, J., & Howard, K. (1999). Clinical Trials versus Mental Health Services Research: Contributions and Connections. Journal of Clinical Psychology, 55, 1135-1146.
- Donenberg, G., & Weisz, J. (1997). Experimental task and speaker effects on parent-child interactions of aggressive and depressed/anxious children. Journal of Abnormal Child Psychology, 25, 367-387.
- Weisz, J., Donenberg, G., Han, S. & Kaunekis, D. (1995). Child and adolescent psychotherapy outcomes in experiments versus clinics: Why the disparity? Journal of Abnormal Child Psychology, 23, 83-106.
- Weisz, J., Donenberg, G., Han, S., & Weiss, B. (1995). Bridging the gap between the lab and the clinic in child and adolescent psychotherapy. Journal of Consulting and Clinical Psychology, 63, 688-701.
- Donenberg, G., & Baker, B. (1993). The impact of young children with externalizing behaviors on their families. Journal of Abnormal Child Psychology, 21, 179-198.
- Weisz, J., Weiss, B., & Donenberg, G. (1992). Child and adolescent psychotherapy outcome: The lab versus the clinic. American Psychologist, 47, 1578-1585.
Reprinted in:
- Hertzig, M. & Farber, E. (Eds.) (1993). Annual Progress in Child Psychiatry and Child Development. Brunner/Mazel: New York. G. R.
- Donenberg, G., & Hoffman, L. (1988). Gender differences in moral development. Sex Roles, 18, 701-717.